The Shrine contains three stained glass windows. The east window depicts The Holy Trinity, the north window depicts Saint Ann and Saint Joachim, and the south window depicts The Stations of the Cross.  

The stained glass in the church depicts the Mysteries of the Rosary.

• The Glorious Mysteries | 1. The Resurrection 2. The Ascension 3. The Descent of the Holy Spirit 4. The Assumption 5. The Coronation of Mary
• The Joyful Mysteries | 1. The Annunciation 2. The Visitation 3. The Nativity 4. The Presentation in the Temple 5. The Finding in the Temple
• The Sorrowful Mysteries | 1. The Agony in the Garden 2. The scourging at the Pillar 3. The Crowning With Thorns 4. The Carrying of the Cross 5. The Crucifixion and Death